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PredictRegulon specifications


Unique identifier OMICS_15161
Name PredictRegulon
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No


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Publication for PredictRegulon

PredictRegulon citations


A Novel Metal Transporter Mediating Manganese Export (MntX) Regulates the Mn to Fe Intracellular Ratio and Neisseria meningitidis Virulence

PLoS Pathog
PMCID: 3182930
PMID: 21980287
DOI: 10.1371/journal.ppat.1002261

[…] g the AlignX program from VectorNTI (Invitrogen), and the resulting multiple alignment of similar motifs was used as a matrix to detect conserved binding sites in different genomes using the programs PredictRegulon and PREDetector .The protein hydropathy profile was calculated using the server TOPPRED using a 20-residue long sliding window (core window: 14 residues, wedge windows: 4 residues). T […]


Identification of ColR binding consensus and prediction of regulon of ColRS two component system

BMC Mol Biol
PMCID: 2689224
PMID: 19445690
DOI: 10.1186/1471-2199-10-46
call_split See protocol

[…] tive ColR binding sites in the genomes of P. putida KT2440,P. aeruginosa PAO1, P. fluorescens PfO-1, P. syringae tomato DC3000 and P. syringae phaseolicola 1448A were searched using two programs: the PredictRegulon server [] and the Virtual Footprint server []. Variations were made in the input sequence length and strand orientation. In Virtual Footprint predictions also different number of mismat […]


PerR Confers Phagocytic Killing Resistance and Allows Pharyngeal Colonization by Group A Streptococcus

PLoS Pathog
PMCID: 2518855
PMID: 18773116
DOI: 10.1371/journal.ppat.1000145
call_split See protocol

[…] [TTANAATNATTNTAA] and AdcR [TTAAC(T/C)(A/G)GTTAA] conserved motif sequences using both ACMES (Advanced Content Matching Engine for Sequences) provided by the University of Missouri-Columbia and the PredictRegulon web server . […]


Detecting cis regulatory binding sites for cooperatively binding proteins

Nucleic Acids Res
PMCID: 2377448
PMID: 18400778
DOI: 10.1093/nar/gkn140

[…] ted the single binding site model, the multiple binding sites model and the homotypic cooperative binding model for several PWM's;. Moreover, we also evaluated the online available prediction methods PredictRegulon (), Cluster Buster () and MSCAN (). We could not make a comparison with the method of Liu and Clarke () or Granek and Clarke () since there are no data available on protein concentratio […]


The Sulfolobus solfataricus radA paralogue sso0777 is DNA damage inducible and positively regulated by the Sta1 protein

Nucleic Acids Res
PMCID: 2175319
PMID: 17921500
DOI: 10.1093/nar/gkm782

[…] hat promoter: TTATT, CANGNA and TTATT. These motifs match with some of the nucleotide sequences included in the generic Sta1-binding region for SIRV1 promoter regions (). In silico searches using the PredictRegulon server () of the defined Sta1-binding motif throughout the S. solfataricus genome have not revealed the presence of that binding sequence in any other S. solfataricus gene promoter regi […]


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PredictRegulon institution(s)
Computational & Functional Genomics Group, Centre for DNA Fingerprinting and Diagnostics, EMBnet India Node, Hyderabad, India; Molecular Oncology Laboratory, Centre for DNA Fingerprinting and Diagnostics, EMBnet India Node, Hyderabad, India
PredictRegulon funding source(s)
This work is partially supported by the Council of Scientific and Industrial Research (CSIR).

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