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PREDITOP specifications

Information


Unique identifier OMICS_25740
Name PREDITOP
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Windows
Programming languages Pascal
Computer skills Advanced
Maintained No

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Publication for PREDITOP

PREDITOP in publications

 (4)
PMCID: 5763123
PMID: 29445754
DOI: 10.1155/2017/2680160

[…] prediction are based on flexibility [], surface accessibility [], and β-turn propensity []. current available bioinformatics tools to predict linear b-cell epitopes using propensity scales include preditop [] and people [] (). preditop [] uses a multiparametric algorithm based on hydrophilicity, accessibility, flexibility, and secondary structure properties of the amino acids. people [] uses […]

PMCID: 4532416
PMID: 26263509
DOI: 10.1371/journal.pone.0135239

[…] in triplicate. expression of exo1, in relation to act1, was analyzed using the cfx 3.0 relative normalized expression program (biorad)., b-cell epitopes of the exo1 protein were predicted using the preditop program []. three predicted peptides (peptide-a, gligsqngfdnsgkt; peptide-b, gpygtgtsgpsfgl; and peptide-c, qqaaaipcynpigrp) were synthesized (>95% purity) and conjugated with keyhole […]

PMCID: 3796886
PMID: 24143055
DOI: 10.6026/97320630009832

[…] properties of experimental determined epitopes (flexibility, hydrophibility, accessibility) have been published for the prediction of antigenic determinants, of which the antigenic index and preditop are good examples. perhaps the simplest method for the prediction of antigenic determinants is that of kolaskar and tongaonkar (1990), which is based on the occurrence of amino acid residues […]

PMCID: 2981878
PMID: 21067544
DOI: 10.1186/1745-7580-6-S2-S2

[…] al. [], pellequer et al. [] and emini et al. [] have proposed propensity scale based methods that use hydrophilicity, flexibility, turns, or solvent accessibility propensity scales (respectively). preditop [], people [], bepitope [], and bcepred [] predict linear b-cell epitopes based on combinations of physico-chemical properties as opposed to propensity measures that rely on individual […]


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PREDITOP institution(s)
Institut de Biologie Structurale, Commissariat à l'énergie atomique et aux énergies alternatives, Grenoble, France

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