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Protocols

Predotar specifications

Information


Unique identifier OMICS_05418
Name Predotar
Alternative name Prediction of Organelle Targeting sequences
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 1.04
Stability Stable
Maintained Yes

Publication for Prediction of Organelle Targeting sequences

Predotar citations

 (184)
library_books

Alternative Respiratory Pathway Component Genes (AOX and ND) in Rice and Barley and Their Response to Stress

2018
Int J Mol Sci
PMCID: 5877776
PMID: 29558397
DOI: 10.3390/ijms19030915

[…] putational determination of the subcellular localization of identified AP genes from rice and barley was carried out using publicly available subcellular localization prediction programs; TargetP [], Predotar [], ChloroP 1.1 [] and Plant-mPLOC []. Proteins targeting to the peroxisomes were predicted using PredPlantPTS1 []. […]

library_books

A comprehensive proteomic analysis of elaioplasts from citrus fruits reveals insights into elaioplast biogenesis and function

2018
PMCID: 5802726
PMID: 29423236
DOI: 10.1038/s41438-017-0014-x

[…] The raw data obtained from the elaioplast proteins were refined by searches against five plastid databanks (Plprot, AT-CHLORO, SUBA, PPDB, and Uniprot) and by three targeting predictors (WoLF PSORT, Predotar, and Target P). Based on the chosen criteria for plastid-localized proteins (Materials and Methods), an inventory of 655 putative plastid proteins was constructed, accounting for 52% of all i […]

library_books

Genome Wide Characterization of Heat Shock Protein 70s from Chenopodium quinoa and Expression Analyses of Cqhsp70s in Response to Drought Stress

2018
Genes
PMCID: 5852552
PMID: 29360757
DOI: 10.3390/genes9020035

[…] etected in 16 HSP70 proteins from quinoa. The gene structure information of Cqhsp70 family was obtained from annotation file of quinoa and was displayed using gene structure display server (GSDS) []. Predotar [] was used to predict the subcellular localization of CqHSP70 proteins based on their protein sequences. To investigate HSP70 neighborhood microsynteny, the genome information of quinoa was […]

library_books

Isolation and functional analysis of fatty acid desaturase genes from peanut (Arachis hypogaea L.)

2017
PLoS One
PMCID: 5731756
PMID: 29244878
DOI: 10.1371/journal.pone.0189759

[…] ces were analyzed by comparisons against the PROSITE database. The putative subcellular localizations of the candidate proteins were estimated by TargetP (http://www.cbs.dtu.dk/services/TargetP/) and Predotar (http://urgi.versailles.inra.fr/predotar/predotar.html). […]

library_books

Genome wide analysis of the Brachypodium distachyon (L.) P. Beauv. Hsp90 gene family reveals molecular evolution and expression profiling under drought and salt stresses

2017
PLoS One
PMCID: 5720741
PMID: 29216330
DOI: 10.1371/journal.pone.0189187

[…] research. It can take part in the cell activity and function efficiently in correct subcellular location []. In our study, based on three bioinformatics tools, including TargetP1.1 [], WoLF PSORT and Predotar v. 1.03[], subcellular localization was conducted in 94 Hsp90 proteins ( and ). Interestingly, based on the above analysis, the results showed that these Hsp90s in Group I are largely distrib […]

library_books

Genomic and Proteomic Evidence for the Presence of a Peroxisome in the Apicomplexan Parasite Toxoplasma gondii and Other Coccidia

2017
Genome Biol Evol
PMCID: 5737649
PMID: 29126146
DOI: 10.1093/gbe/evx231

[…] November 10, 2017, ), SignalP4.1 (http://www.cbs.dtu.dk/services/SignalP/; last accessed November 10, 2017, ), TargetP1.1 (http://www.cbs.dtu.dk/services/TargetP/; last accessed November 10, 2017, ), Predotar (https://urgi.versailles.inra.fr/predotar/; last accessed November 10, 2017; ), and PredSL (http://aias.biol.uoa.gr/PredSL/input.html; last accessed November 10, 2017, ) were used to predict […]


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Predotar institution(s)
Station de Génétique et Amélioration des Plantes, INRA, Versailles, France; Unité de Recherche en Génomique Végétale (INRA-CNRS-UEVE), Evry, France; Unité de Recherche en Génomique-Info (INRA), Evry, France
Predotar funding source(s)
Funded by Génoplante (project Bi1999030).

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