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PredPhospho specifications

Information


Unique identifier OMICS_05927
Name PredPhospho
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No

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Publication for PredPhospho

PredPhospho in publications

 (6)
PMCID: 3853090
PMID: 24564522
DOI: 10.1186/1471-2105-14-S16-S2

[…] and expensive. thus, many researches are undertaken to develop a computational method for the identification of kinase-specific phosphorylation sites, including netphosk [], scansite 2.0 [], predphospho [], gps [], plantphos [], ppsp [], metapredps [], netphorest [] and kinasephos [-]. the summary information of the previously developed phosphorylation site prediction methods is listed […]

PMCID: 3380725
PMID: 22759584
DOI: 10.1186/1477-5956-10-S1-S7

[…] number of computational tools for predicting phosphorylation sites have been reported []. these methods can be roughly grouped into two categories: kinase-specific predictors (e.g. scansite [], predphospho [], phosite [], netphosk [], gps[], kinasephos [], ppsp []) and non-specific predictors (e.g. netphos [], disphos []). given a protein sequence, the non-specific methods can only predict […]

PMCID: 3040535
PMID: 21210988
DOI: 10.1186/1471-2105-11-S12-S9

[…] prediction tools available before musite, including disphos [], netphos [], scan-x [], scansite [], netphosk [], gps [], kinasephos [], predikin [], crphos [], automotif [], pkaps [], phoscan [], predphospho [], and netphorest []. machine learning techniques were adopted in most of these tools. although there are general open-source machine learning frameworks such as bioweka [] that support […]

PMCID: 2988416
PMID: 20088902
DOI: 10.1111/j.1365-313X.2010.04138.x

[…] suitable for ck2 could also provide valid answers with regard to cpck2 phosphorylation site(s) on atsig6., prediction tools netphos 2.0 (), netphosk 1.0 (), kinasephos 2.0 (), disphos (), gps (), predphospho () and scansite () were used, leading to the detection of putative sites (+). those selected for subsequent experiments are set in bold. the phosphoacceptor residue (*) and the acidic […]

PMCID: 2559891
PMID: 18831792
DOI: 10.1186/1471-2164-9-S2-S26

[…] computational methods have been developed for identifying protein phosphorylation sites according to their surrounding peptide sequences. some of these methods (including netphos [], netphosk [], predphospho [], gps [], ppsp [], scansite [] and phospho.elm []) depend on datasets of both phosphorylated and non-phosphorylated peptide sequences for training and therefore relying on specific […]


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PredPhospho institution(s)
National Genome Research Institute, Eunpyung-Gu, Seoul, Korea

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