PredRAD statistics

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PredRAD specifications


Unique identifier OMICS_09147
Name PredRAD
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Python, BioPython, Bowtie
Maintained Yes


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  • person_outline Timothy M. Shank <>

Publication for PredRAD

PredRAD in publication

PMCID: 4700943
PMID: 26537225
DOI: 10.1093/gbe/evv210

[…] editor: cécile ané, data deposition: this project, including the analytical software pipeline (predrad), the visualization scripts, and the output databases, has been deposited at github under the accession, high-throughput sequencing of reduced representation […]

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PredRAD institution(s)
Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA; Biology Department, Massachusetts Institute of Technology, Cambridge, MA, USA; Colombian Corporation for Agricultural Research CORPOICA, Bogotá, Colombia
PredRAD funding source(s)
This research was supported by the Office of Ocean Exploration and Research of the National Oceanic and Atmospheric Administration (NA09OAR4320129); the Division of Ocean Sciences of the National Science Foundation (OCE-1131620 to TS); the Astrobiology Science and Technology for Exploring Planets program of the National Aeronautics and Space Administration (NNX09AB76G); the Academic Programs Office (Ocean Ventures Fund), the Ocean Exploration Institute (Fellowship support) and the Ocean Life Institute of the Woods Hole Oceanographic Institution (internal grant).

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