PredRAD specifications


Unique identifier OMICS_09147
Name PredRAD
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Python, BioPython, Bowtie
Maintained Yes


No version available



  • person_outline Timothy M. Shank

Publication for PredRAD

PredRAD citation


Predicting RAD seq Marker Numbers across the Eukaryotic Tree of Life

Genome Biol Evol
PMCID: 4700943
PMID: 26537225
DOI: 10.1093/gbe/evv210

[…] ags in the organism of interest? and 2) how many markers can be obtained with a particular enzyme in the organism of interest? The results from this study coupled with the developed software pipeline PredRAD will allow any researcher to obtain an approximate answer to these questions. The flow diagram in illustrates a suggested workflow. Fig. 9.—In a best-case scenario for the practical design of […]

PredRAD institution(s)
Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA; Biology Department, Massachusetts Institute of Technology, Cambridge, MA, USA; Colombian Corporation for Agricultural Research CORPOICA, Bogotá, Colombia
PredRAD funding source(s)
This research was supported by the Office of Ocean Exploration and Research of the National Oceanic and Atmospheric Administration (NA09OAR4320129); the Division of Ocean Sciences of the National Science Foundation (OCE-1131620 to TS); the Astrobiology Science and Technology for Exploring Planets program of the National Aeronautics and Space Administration (NNX09AB76G); the Academic Programs Office (Ocean Ventures Fund), the Ocean Exploration Institute (Fellowship support) and the Ocean Life Institute of the Woods Hole Oceanographic Institution (internal grant).

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