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Protocols

PReMod specifications

Information


Unique identifier OMICS_01873
Name PReMod
Restrictions to use None
Maintained No

Taxon


  • Primates
    • Homo sapiens

Publication for PReMod

PReMod citations

 (9)
library_books

Reduced dosing and liability in methadone maintenance treatment by targeting oestrogen signal for morphine addiction

2017
J Cell Mol Med
PMCID: 5706516
PMID: 28699698
DOI: 10.1111/jcmm.13266

[…] ; http://genome.ucsc.edu). The putative estrogen response element (ERE) area were allocates by comparison the results predicting by TFSEARCH website (http://www.cbrc.jp/research/db/TFSEARCH.html) and PReMod database (http://genomequebec.mcgill.ca/PReMod/). Then, the genotypes of ERE‐SNP alignment score were performed by The BEST (The Binding Element Searching Tool; http://thebest.binfo.ncku.edu.t […]

library_books

Progress and challenges in bioinformatics approaches for enhancer identification

2015
Brief Bioinform
PMCID: 5142011
PMID: 26634919
DOI: 10.1093/bib/bbv101

[…] matin signatures as input. Putative enhancers derived from human CD4T cell data from Wang et al. [] based on P300 ChIP-seq peak distal to TSS overlapping with computationally predicted enhancers from PreMod database []. The FS component of CSI-ANN, based on Fisher Discriminant Analysis (FDA), reported several histone marks such as H3K4me3, H4Ac and H3, which separate enhancers from background sequ […]

call_split

Tracing the Evolution of Lineage Specific Transcription Factor Binding Sites in a Birth Death Framework

2014
PLoS Comput Biol
PMCID: 4140645
PMID: 25144359
DOI: 10.1371/journal.pcbi.1003771
call_split See protocol

[…] hat use phylogenetic footprinting approaches. We compared with phylogenetic footprinting methods at both element level (using MotifMap which is based on the method used in –) and module level (using PReMod ). Overall, our method outperformed both MotifMap and PReMod (see Supplementary Results in , , and ). […]

library_books

Towards automated traceability maintenance

2012
PMCID: 3587459
PMID: 23471308
DOI: 10.1016/j.jss.2011.10.023

[…] before destruction. For the modification of an element, both pre and post modification properties are required for analysis. Three change events are therefore distinguished: ADD, DEL and a composite preMOD/postMOD event.In principle, change events to all supported element types of a modeling tool could be issued and they could capture all available properties of the elements. Such an approach wou […]

library_books

Common variation at 10p12.31 near MLLT10 influences meningioma risk

2011
Nat Genet
PMCID: 5053355
PMID: 21804547
DOI: 10.1038/ng.879

[…] distribution of confidence intervals defined by Gabriel et al.To annotate potential regulatory sequences within disease loci we implemented in silico searches using Transfac Matrix Database v7.29 and PReMod10 software. […]

library_books

A genome wide association study of Hodgkin Lymphoma identifies new susceptibility loci at 2p16.1 (REL), 8q24.21, and 10p14 (GATA3)

2010
Nat Genet
PMCID: 4268499
PMID: 21037568
DOI: 10.1038/ng.696

[…] asis of distribution of confidence intervals defined by Gabriel et al. To annotate potential regulatory sequences within disease loci we implemented in silico searches using Transfac Database(v7.29), PReMod10 and EEL. […]


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PReMod institution(s)
McGill University and Genome Quebec Innovation Center, Montreal, Qc, Canada

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