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Protocols

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Unique identifier OMICS_22299
Name PrePRINTS
Restrictions to use None
Database management system PostgreSQL
Community driven No
Data access Browse
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Version 2.0
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PrePRINTS citations

 (9)
library_books

Sparse graphs using exchangeable random measures

2017
J R Stat Soc Series B Stat Methodol
PMCID: 5699441
PMID: 29200934
DOI: 10.1111/rssb.12233

[…] d on acting in the same movie (http://www.cise.ufl.edu/research/sparse/matrices/Pajek/IMDB.html); cond‐mat1—co‐authorship network (https://snap.stanford.edu/data/emailEnron.html) (Newman, ), based on preprints posted to condensed matter of arXiv between 1995 and 1999, obtained from the bipartite preprints–authors network using a one‐mode projection; cond‐mat2—as in cond‐mat1, but using Newman's pr […]

library_books

The new alchemy: Online networking, data sharing and research activity distribution tools for scientists

2017
F1000Res
PMCID: 5580431
PMID: 28928951
DOI: 10.5256/f1000research.13189.r24792

[…] nals and other people who wish to use our figures do not have to request permission as they are already in the public domain. figshare is also a platform where we share our presentations, posters and preprints (other preprint servers do exist, such as arXiv, bioRxiv, and the impending ChemRXiv. It is also where we tend to host our data that we point to from our publications, as well as using subse […]

library_books

Single virus genomics reveals hidden cosmopolitan and abundant viruses

2017
Nat Commun
PMCID: 5490008
PMID: 28643787
DOI: 10.1038/ncomms15892

[…] e viral data set as factor. Alternatively, reciprocal best-hit fragment recruitment with the viral data set was done as described but employing the Enveomics bioinformatics package (https://peerj.com/preprints/1900/). For the metaproteomic recruitment analyses, peptides obtained from the Oregon coast and Tara Oceans Expedition were compared with the vSAG and the above-mentioned viral genomes from […]

library_books

Walking the Talk: Adopting and Adapting Sustainable Scientific Software Development processes in a Small Biology Lab

2016
PMCID: 5142744
PMID: 27942385
DOI: 10.5334/jors.35

[…] f and also as part of a range of workshop material. Adoption of khmer is driven not only by its utility in addressing otherwise difficult or intractable problems, but also by CTB's blogging, research preprints and publications, and presentations.The user base for khmer is unknown but appears to be significant. While we do not track users per se, there are over 1500 downloads of khmer a month from […]

library_books

A Practical Guide for Improving Transparency and Reproducibility in Neuroimaging Research

2016
PLoS Biol
PMCID: 4936733
PMID: 27389358
DOI: 10.1371/journal.pbio.1002506

[…] will be available in the decades to come. In addition, a platform such as Open Science Framework (OSF; www.osf.io) can be used to link datasets deposited in field-agnostic repositories with code and preprints (see below). If one is concerned about losing competitive advantage by sharing data before the relevant manuscript will be accepted and published (so called “scooping”), one can consider set […]

call_split

Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream

2015
Genome Biol Evol
PMCID: 4524488
PMID: 26133389
DOI: 10.1093/gbe/evv121
call_split See protocol

[…] ”). Opentree provided a draft of the species tree (April 16, 2014) and the corresponding species mapping to taxonomic identifiers. The 216 eukaryotic species tree published by Huerta-Cepas (peerj.com/preprints/223/) was provided, including NCBI taxonomic identifiers and annotated branch support values (aLRT SH). Seventy-one species were mapped by taxonomic identifiers, 27 by species name. The ToL […]


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