Preseq pipeline

Preseq specifications

Information


Unique identifier OMICS_05451
Name Preseq
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for Preseq

Preseq citations

 (2)
2017
PMCID: 5696376

[…] percentages of the observed cis interactions in the expected total number of cis interactions were calculated for each bait. the total number of distinct cis interactions was estimated by using preseq software70., using the read count data at each hindiii site (wiggle format data), we analyzed the contact probabilities of the hindiii site by the following method53. in our analysis, instead […]

2016
PMCID: 5312299

[…] thresholds (https://github.com/udo-stenzel/biohazard). reads were then mapped to the human genome reference hg19 using bwa-0.4.9. library complexity was estimated from the sequencing reads using preseq-0.1.0 [14] with steps of 100,000 reads. duplicate reads were marked using picardtools (http://picard.sourceforge.net/) and the mapped fraction of reads was calculated without read mapping […]

Preseq institution(s)
Department of Mathematics and Department of Molecular and Computational Biology, University of Southern California, Los Angeles, CA, USA

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