PreTIS specifications

Information


Unique identifier OMICS_14194
Name PreTIS
Alternative name Prediction of translation initiation sites
Interface Application programming interface
Restrictions to use None
Input data 5’ UTR of human mRNA sequence, homologous mouse mRNA sequences, translational start codons.
Output data Bar plot of predicted initiation confidence values for each start site, 5' UTR sequence with colored alternative start sites, table visualizing start site properties, result of the Blast search.
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

Maintainer


  • person_outline Volkhard Helms <>

Publication for Prediction of translation initiation sites

PreTIS institution(s)
Center for Bioinformatics, Saarland University, Saarbrücken, Germany; Saarbrücken Graduate School of Computer Science, Saarland University, Saarbrücken, Germany

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