PreTIS statistics

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Citations per year

Number of citations per year for the bioinformatics software tool PreTIS
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Tool usage distribution map

This map represents all the scientific publications referring to PreTIS per scientific context
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Associated diseases

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PreTIS specifications

Information


Unique identifier OMICS_14194
Name PreTIS
Alternative name Prediction of translation initiation sites
Interface Application programming interface
Restrictions to use None
Input data 5’ UTR of human mRNA sequence, homologous mouse mRNA sequences, translational start codons.
Output data Bar plot of predicted initiation confidence values for each start site, 5' UTR sequence with colored alternative start sites, table visualizing start site properties, result of the Blast search.
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

Maintainer


  • person_outline Volkhard Helms

Publication for Prediction of translation initiation sites

PreTIS citations

 (3)
library_books

An immediate–late gene expression module decodes ERK signal duration

2017
Mol Syst Biol
PMCID: 5448165
PMID: 28468958
DOI: 10.15252/msb.20177554

[…] ks with varying degree of complexity have been presented to estimate the contribution of processing, transcription and degradation rates from measured RNA dynamics (Zeisel et al, ; Rabani et al, ; de Pretis et al, ; Cheng et al, ). Two main conclusions arise from these studies. First, ordinary differential equations with only few parameters can accurately reflect mRNA dynamics. Secondly, changes i […]

library_books

Children of mentally ill parents—a pilot study of a group intervention program

2015
Front Psychol
PMCID: 4611090
PMID: 26539129
DOI: 10.3389/fpsyg.2015.01494

[…] Howard and Underdown, ; Rasic et al., ). Studies have shown that about 23–32% of patients admitted to mental health care are caring for children (Test et al., ; Östman and Hansson, ; Fraser et al., ; Pretis and Dimova, ; Maybery et al., ). Given the number of families in Germany and the overall rates of adult psychological illness, this suggests ~3.8 million children that have a parent with a psyc […]

library_books

Clinicoradiological appraisal of ‘paraduodenal pancreatitis’: Pancreatitis outside the pancreas!

2015
PMCID: 4531457
PMID: 26288527
DOI: 10.4103/0971-3026.161467

[…] d/or duodenal wall cysts which may protrude into the duodenal lumen and (2) the “solid” type characterized by a marked medial duodenal wall thickening with a sheet-like solid mass in the groove [].[] Pretis et al., in their series of 112 patients, reported cystic variant in 79 (70%) patients and solid type in 33 (30%) patients,[] whereas of the 33 patients in the present study, the disease was pre […]


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PreTIS institution(s)
Center for Bioinformatics, Saarland University, Saarbrücken, Germany; Saarbrücken Graduate School of Computer Science, Saarland University, Saarbrücken, Germany

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