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Pride-asap specifications


Unique identifier OMICS_03348
Name Pride-asap
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License Apache License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for Pride-asap

Pride-asap citation


Unbiased Protein Association Study on the Public Human Proteome Reveals Biological Connections between Co Occurring Protein Pairs

PMCID: 5491052
PMID: 28480704
DOI: 10.1021/acs.jproteome.6b01066

[…] the pandey-data set contained only fragmentation mass spectra without identifications., the experiment-specific identifications present in the pride-data set are used for automatic preprocessing by pride-asap (b), which infers optimal search parameters for the downstream analysis of each individual experiment. these inferred parameters include the precursor ion and fragment ion mass tolerances, […]

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Pride-asap institution(s)
Department of Medical Protein Research, VIB, Ghent, Belgium

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