Protocols

Pride-asap specifications

Information


Unique identifier OMICS_03348
Name Pride-asap
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License Apache License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Publication for Pride-asap

Pride-asap citations

 (2)
call_split

Unbiased Protein Association Study on the Public Human Proteome Reveals Biological Connections between Co Occurring Protein Pairs

2017
J Proteome Res
PMCID: 5491052
PMID: 28480704
DOI: 10.1021/acs.jproteome.6b01066
call_split See protocol

[…] et, the Pandey-data set contained only fragmentation mass spectra without identifications.The experiment-specific identifications present in the pride-data set are used for automatic preprocessing by pride-asap (b), which infers optimal search parameters for the downstream analysis of each individual experiment. These inferred parameters include the precursor ion and fragment ion mass tolerances, […]

library_books

Exploring the potential of public proteomics data

2015
Proteomics
PMCID: 4738454
PMID: 26449181
DOI: 10.1002/pmic.201500295

[…] ics Experiment) guidelines ), there remains a gap between what is reported and what ought to be reported. While it is possible to attempt to infer the missing information as, for example, done by the pride‐asap pipeline , this is often far from straightforward and may result in incorrect assumptions. The only real solution is to make it easier for submitters to provide additional information, or t […]

Pride-asap institution(s)
Department of Medical Protein Research, VIB, Ghent, Belgium

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