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PRIDE-Cluster specifications


Unique identifier OMICS_23683
Name PRIDE-Cluster
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes


  • person_outline Johannes Griss

Publication for PRIDE-Cluster

PRIDE-Cluster citations


Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets

Nat Methods
PMCID: 4968634
PMID: 27493588
DOI: 10.1038/nmeth.3902

[…] The redeveloped PRIDE Cluster resource provides full access to these spectrum clustering results and links them with the originally submitted data in PRIDE Archive (). The clustering process will be repeated and the […]


Identifying novel biomarkers through data mining—A realistic scenario?

Proteomics Clin Appl
PMCID: 4833187
PMID: 25347964
DOI: 10.1002/prca.201400107

[…] of false‐positive identifications.However, since then PRIDE has already taken several steps to explicitly support the reuse of submitted data. In this context, one of the most important resources is “PRIDE Cluster” . PRIDE Cluster uses a spectral clustering algorithm to create an independent assessment of reliable peptide and protein identifications. It clusters all identified spectra submitted to […]


CX, DPX and PRIDE: WWW servers for the analysis and comparison of protein 3D structures

Nucleic Acids Res
PMCID: 1160123
PMID: 15980464
DOI: 10.1093/nar/gki362

[…] tion compares two structures. Its output contains not only the final PRIDE score, but also the values it was derived from as well as a graphic representation of the underlying histograms. In case the PRIDE cluster option is used to analyze n protein 3D structures (presented as concatenated PDB files), the server provides three, easily downloadable output files: (i) the n × n square matrix where ea […]

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PRIDE-Cluster institution(s)
EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
PRIDE-Cluster funding source(s)
Supported by the Wellcome Trust [grant number WT085949MA], the EU FP7 grants LipidomicNet [grant number 202272], ProteomeXchange [grant number 260558] and a Biotechnology and Biological Sciences Research Council CASE studentship, also funded by Philips.

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