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- person_outline Johannes Griss
Publication for PRIDE-Cluster
Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets
[…] The redeveloped PRIDE Cluster resource provides full access to these spectrum clustering results and links them with the originally submitted data in PRIDE Archive (). The clustering process will be repeated and the […]
Identifying novel biomarkers through data mining—A realistic scenario?
[…] of false‐positive identifications.However, since then PRIDE has already taken several steps to explicitly support the reuse of submitted data. In this context, one of the most important resources is “PRIDE Cluster” . PRIDE Cluster uses a spectral clustering algorithm to create an independent assessment of reliable peptide and protein identifications. It clusters all identified spectra submitted to […]
CX, DPX and PRIDE: WWW servers for the analysis and comparison of protein 3D structures
[…] tion compares two structures. Its output contains not only the final PRIDE score, but also the values it was derived from as well as a graphic representation of the underlying histograms. In case the PRIDE cluster option is used to analyze n protein 3D structures (presented as concatenated PDB files), the server provides three, easily downloadable output files: (i) the n × n square matrix where ea […]
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