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Pride Inspector specifications

Information


Unique identifier OMICS_14516
Name Pride Inspector
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Output format mzML, mzXML, zIdentML, PRIDE XML, mzTab
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License Apache License version 2.0
Computer skills Medium
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Juan Antonio Vizcaíno <>

Publication for Pride Inspector

Pride Inspector in publications

 (8)
PMCID: 5643318
PMID: 29038488
DOI: 10.1038/s41598-017-13440-x

[…] for protein identification. all the spectra and the related information were submitted to proteomexchange (http://www.proteomexchange.org/, project accession pxd002736) and can be inspected by pride inspector., the ms/ms spectral information was submitted to proteome discoverer version 1.4.1.14, thermo fisher scientific. the data files were combined and searched against the swiss-prot […]

PMCID: 5500760
PMID: 28515314
DOI: 10.1074/mcp.M117.068429

[…] natively implementing the format, some converters are available, e.g. procon () and proteowizard (). visualization software for mzidentml files is also now available, most notably the open source pride inspector tool (), which was updated in 2016 to fully support mzidentml, and the proteoidviewer (). some of these tools are reusing open source libraries tailored to the format […]

PMCID: 5414595
PMID: 28118949
DOI: 10.1016/j.tibs.2017.01.001

[…] clear annotation errors (e.g., related to ptms), and ensuring an acceptable level of technical and biological metadata. in addition, as a key point, the availability of free-to-use tools such as pride inspector , enables potential errors to be detected by anyone in the community., of course, qc metric calculation at the level of proteomics resources can serve only as a postmortem, […]

PMCID: 4738454
PMID: 26449181
DOI: 10.1002/pmic.201500295

[…] in targeted proteomics approaches) , , , , . importantly, support for these standards is provided through software libraries or tools such as proteowizard , pride converter , , mzidlibrary , and pride inspector . successful adoption of these standards is moreover demonstrated by the existence of import and/or export capabilities in many of the most popular software in the field., the final […]

PMCID: 4543086
PMID: 26322324
DOI: 10.1016/j.dib.2015.07.029

[…] like graphical steps to include minimum information about a proteomics experiment (miape). the entries in each pride xml file were further verified for correctness using the freely available tool pride inspector, version 2.1.1 . the ‘complete’ submission work flow of the freely available px submission tool (version 2.1.0: http://www.proteomexchange.org/submission) was chosen and the raw data […]


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Pride Inspector institution(s)
European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK; Ruhr-Universität Bochum, Medizinisches Proteom-Zenter, Medical Bioinformatics, Bochum, Germany; Division of Immunology, Allergy and Infectious Diseases, Department of Dermatology, Medical University of Vienna, Vienna, Austria; Department of Proteomics, Center for Genetic Engineering and Biotechnology, Ciudad de la Habana, Cuba
Pride Inspector funding source(s)
This work was funded by the BBSRC “PROCESS” grant (reference BB/K01997X/1), the BBSRC “Quantitative Proteomics” grant (reference BB/I00095X/1), the BBSRC “ProteoGenomics” grant (reference number BB/L024225/1), the Wellcome Trust (grant number WT101477MA), the EU FP7 grant PRIME-XS (grant number 262067), the EMBL core funding, the EU FP7 “ProteomeXchange” grant (grant number 260558), the project No. 2010CDB01401 of the Natural Science Foundation of the Hubei Province (China), the Educational Commission of the Hubei Province (No. Q20113001) and the Protein Unit for Research in Europe (PURE), a project of North Rhine-Westphalia, Germany.

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