Primaclade specifications


Unique identifier OMICS_02356
Interface Web user interface
Restrictions to use None
Input format FASTA, clustalw, PHYLIP, nexus, mega, emboss
Output data A page containing the original alignment file displayed horizontally across the top of the page, followed by a single line showing the consensus sequence, the list of generated primers corresponding to their correct position within the alignment display and reverse complement for the 3' primers.
Output format HTML
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline Elizabeth A. Kellogg <>


Unique identifier OMICS_02356
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Requirements Comprehensive Perl Archive Network (CPAN) Perl modules, BioPerl modules, the Primer3 software


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Primaclade article

Primaclade institution(s)
Department of Biology, University of Missouri-St Louis, One University Boulevard, St Louis, MO, USA
Primaclade funding source(s)
Supported by NSF grants MCB-0110809 and DBI-0110189.

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