PrIME-GSR statistics

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Citations per year

Number of citations per year for the bioinformatics software tool PrIME-GSR

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Associated diseases


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PrIME-GSR specifications


Unique identifier OMICS_18452
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages C++
Computer skills Advanced
Version 1.0
Stability Stable
Bison, Flex, LAPACK, BLAS
Source code URL
Maintained Yes




No version available



  • person_outline Jens Lagergren

Publication for PrIME-GSR

PrIME-GSR citations


Improved gene tree error correction in the presence of horizontal gene transfer

PMCID: 4393519
PMID: 25481006
DOI: 10.1093/bioinformatics/btu806

[…] es tree and a reconciliation model that makes it possible to extract topological information from the species tree and use it to guide gene tree inference. Some of these methods, such as TreeBest (), PrIME-GSR (DLRS) () and SPIMAP (), reconstruct a gene tree directly from sequence data, but most, such as NOTUNG (), tt (), TreeFix (), AnGST () and MowgliNNI (), take in previously reconstructed gene […]


The iPlant Collaborative: Cyberinfrastructure for Plant Biology

Front Plant Sci
PMCID: 3355756
PMID: 22645531
DOI: 10.3389/fpls.2011.00034

[…] ture, and an interactive tree viewer forms a central part of the interface. iPlant is also developing an alternative gene/species tree reconciliation method based on the Bayesian approach employed in PrIME-GSR (Akerborg et al., ). These two methods are being used to analyze the growing amount of data coming from the 1,000 plant transcriptome project, which has the goal of sequencing expressed gene […]

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PrIME-GSR institution(s)
School for Computer Science and Communication, Royal Institute of Technology, Stockholm, Sweden; Stockholm Bioinformatics Center, AlbaNova, Stockholm University, Stockholm, Sweden
PrIME-GSR funding source(s)
Supported by the Swedish Research Council.

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