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Primer design software tools | Synthetic biology

Customized RNA synthesis is in demand for biological and biotechnological research. While chemical synthesis and gel or chromatographic purification of RNA is costly and difficult for sequences longer than tens of nucleotides, a pipeline of primer…
Primerize-2D
Web

Primerize-2D

Allows synthesis of large libraries of desired mutants across design and…

Allows synthesis of large libraries of desired mutants across design and efficient organization of primers. The Primerize interface has been developed for RNA domains. This tool supports online…

Primerize
Desktop
Web

Primerize

A web application for primer designs of DNA sequence PCR assembly. Primerize is…

A web application for primer designs of DNA sequence PCR assembly. Primerize is optimized to reduce primer boundaries mispriming, is designed for fixed sequences of RNA problems, and passed wide and…

AMUSER
Web

AMUSER Automated DNA Modifications with USER cloning

USER cloning is a fast and versatile method for engineering of plasmid DNA.…

USER cloning is a fast and versatile method for engineering of plasmid DNA. AMUSER is a user friendly web server tool that automates the design of optimal PCR primers for several distinct USER…

Assembly PCR…
Desktop

Assembly PCR Oligo Maker

A computer program created to automate the design of oligodeoxynucleotides for…

A computer program created to automate the design of oligodeoxynucleotides for the PCR-based construction of long DNA molecules. This program has been specifically designed to aid in the construction…

Collagene
Desktop

Collagene

Supports and allows reutilization of contemporary cloning methods. Collagene…

Supports and allows reutilization of contemporary cloning methods. Collagene offers advanced functions for the visualization of the results.

G T A T C G C T A
WebDSV
Web

WebDSV

Allows users to work on DNA sequences. WebDSV assists in creation, edition and…

Allows users to work on DNA sequences. WebDSV assists in creation, edition and analysis of DNA sequences. This tool enables visualization of sequences and permits user to mark them. It generates…

DePiCt
Web

DePiCt

Permits to design degenerate primers. DePiCt starts by computing a sequence…

Permits to design degenerate primers. DePiCt starts by computing a sequence alignment of the genes or the protein sequences and then identifies at least two conserved regions in the alignment such…

Benchling
Web

Benchling

Allows scientists to design, share, and record experiments or tests. The…

Allows scientists to design, share, and record experiments or tests. The Benchling platform contains a Biological Registration System, an Electronic Lab Notebook, and Molecular Biology Design and…

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