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Protocols

primetv specifications

Information


Unique identifier OMICS_10473
Name primetv
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.5.6
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Bengt Sennblad

Information


Unique identifier OMICS_10473
Name primetv
Interface Web user interface
Restrictions to use None
Programming languages C++
Computer skills Basic
Version 1.5.6
Stability Stable
Maintained Yes

Maintainer


  • person_outline Bengt Sennblad

Publication for primetv

primetv citations

 (4)
call_split

Molecular evolution and functional divergence of tubulin superfamily in the fungal tree of life

2014
Sci Rep
PMCID: 5381371
PMID: 25339375
DOI: 10.1038/srep06746
call_split See protocol

[…] s). Trees were sampled every 1000th iteration over 1.1 million generations after a burn-in of 101 samples.The reconciled trees were built using most parsimonious reconciliations methods and viewed by Primetv. The species tree was built based on the alpha tubulin gene tree and manually edited according to the previous studies. […]

call_split

The Evolution and Appearance of C3 Duplications in Fish Originate an Exclusive Teleost c3 Gene Form with Anti Inflammatory Activity

2014
PLoS One
PMCID: 4057122
PMID: 24926798
DOI: 10.1371/journal.pone.0099673
call_split See protocol

[…] most parsimonious reconciliation of the estimated gene tree and the species tree was performed with Notung 2.6 , and represented with FigTree v1.3.1 (http://tree.bio.ed.ac.uk/software/figtree/) and PrimeTV . Synteny was investigated with Genomicus v69.01 . […]

library_books

Impact of television coverage on the number and type of symptoms reported during a health scare: a retrospective preā€“post observational study

2012
BMJ Open
PMCID: 3425900
PMID: 22904334
DOI: 10.1136/bmjopen-2012-001607

[…] x New Zealand, Newztext Plus), commonly used news websites (stuff.co.nz and nzherald.co.nz) and on the websites of the three free-to-air national television news stations (tvnz.co.nz, 3news.co.nz and primetv.co.nz) using a standard list of search terms (Eltroxin, Goldshield, Synthroid, thyroid, thyroxine, levothyroxine, hypothyroid, hypothyroidism, GSK, Glaxo, GlaxoSmithKline). From these searches […]

library_books

Variation of presence/absence genes among Arabidopsis populations

2012
BMC Evol Biol
PMCID: 3433342
PMID: 22697058
DOI: 10.1186/1471-2148-12-86

[…] y using all SNPs of non-P/A genes among genomes, based on the Neighbor-joining method []. A reconciled tree, which was viewed as the evolved P/A tree in the accession tree, was then illustrated using primetv software []. […]

Citations

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primetv institution(s)
Stockholm Bioinformatics Center and Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden; Stockholm Bioinformatics Center and School of Computer Science and Communication, KTH, Stockholm, Sweden

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