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PRIN specifications


Unique identifier OMICS_02968
Alternative name Predicted Rice Interactome Network
Restrictions to use None
Maintained Yes


  • Plants and Fungi
    • Oryza sativa

Publication for Predicted Rice Interactome Network

PRIN citations


Redox regulation of PEP activity during seedling establishment in Arabidopsis thaliana

Nat Commun
PMCID: 5752674
PMID: 29298981
DOI: 10.1038/s41467-017-02468-2

[…] Run-on transcription assay was performed with isolated chloroplasts of Col-0 and prin2-2 seedlings. The psaA, psbA, and 16SrRNA DNA probes were linked to a Hybond-N + membrane (Amersham RPN3050B) and hybridized with total RNA extract from the respective chloroplasts. The signal wa […]


Prediction of cassava protein interactome based on interolog method

Sci Rep
PMCID: 5722940
PMID: 29222529
DOI: 10.1038/s41598-017-17633-2

[…] of these template plants was obtained from Phytozome V9 and Uniprot databases, and the protein interaction information was collected from seven databases; IntAct, MINT, AtPIN, AtPID, PAIR, APID, and PRIN (Fig. ). To find protein orthologs in cassava, we performed BLASTp search against the cassava genome sequence. The cassava orthologous proteins were identified if the identity percentage ≥ 60, co […]


Plant genome and transcriptome annotations: from misconceptions to simple solutions

Brief Bioinform
PMCID: 5952960
PMID: 28062412
DOI: 10.1093/bib/bbw135

[…] g the split-ubiquitin system. The effort for establishing interaction databases is moving onto other plant species, as can be seen in the Protein–Protein Interaction network for Maize (PPIM) [] and a predicted rice interactome network (PRIN) []. A combination of co-expression and interaction data can improve the reliability of the functional prediction []. […]


Remotely sensed detection of effects of extreme droughts on gross primary production

Sci Rep
PMCID: 4908591
PMID: 27301671
DOI: 10.1038/srep28269

[…] oerner et al.: Because the relationship between PRI and LUE varies over the seasons, along with the dynamics in green biomass that absorbs the incoming radiation, we calculated a standardized PRI (PRIn), which is normalized for APAR (absorbed PAR; see for rationale). This normalization allows to focus on the part of PRI explaining LUE and photosynthetic performance because it removes the part l […]


What Lies Beneath: Sub Articular Long Bone Shape Scaling in Eutherian Mammals and Saurischian Dinosaurs Suggests Different Locomotor Adaptations for Gigantism

PLoS One
PMCID: 3793987
PMID: 24130690
DOI: 10.1371/journal.pone.0075216

[…] ee for an illustrated description of the major landmarks selected for TPS analysis.A PCA of the partial warps was run to determine where the most shape variation occurred in the sample, expressed as PRIN 1. This was done to determine how long bone and subarticular shapes changed among taxa and postures irrespective of size. The program TPSRelw generated the deformation grids for visualization of […]


PTX3 genetic variations affect the risk of Pseudomonas aeruginosa airway colonization in cystic fibrosis patients

Genes Immun
PMCID: 3001954
PMID: 20927127
DOI: 10.1038/gene.2010.41

[…] evaluating the paper. This work was supported by grants from Telethon GGP05095, Fondazione Cariplo NOBEL Grant, EU grant FP7 HLH-cure (project no. 201461), e-rare EU grant, Rare Diseases-ISS project, PRIN 2007 no. 2007ACZMMZ_005, Associazione Davide Rodella Onlus.The authors declare no conflict of interest. […]


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PRIN institution(s)
Department of Bioinformatics, State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China

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