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PRINTR specifications

Information


Unique identifier OMICS_08404
Name PRINTR
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Maintainer


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Publication for PRINTR

PRINTR citations

 (3)
library_books

Non Coding RNAs in Lung Cancer: Contribution of Bioinformatics Analysis to the Development of Non Invasive Diagnostic Tools

2016
Genes
PMCID: 5295003
PMID: 28035947
DOI: 10.3390/genes8010008

[…] r algorithm like Struct-NB combine sequence and structural-based information of protein-RNA complex interfaces from PDB using a Gaussian Naive Bayes classifiers machine learning algorithm [], whereas PRINTR calculates interactions using a SVM and PSSM [,].All these algorithms perform high-confidence lncRNA–protein interaction predictions and are helpful to find potential RNA–protein interaction pa […]

library_books

Identification of protein RNA interaction sites using the information of spatial adjacent residues

2011
Proteome Sci
PMCID: 3289077
PMID: 22165911
DOI: 10.1186/1477-5956-9-S1-S16

[…] for prediction of DNA and RNA binding sites based on the information of side chain pKa value, hydrophobicity index and molecular mass of an amino acid. Later, Wang [] also develop a SVM-based method PRINTR to identify RNA binding sites in proteins using different feature information, such as single sequence, multiple sequence alignment, secondary structure and solvent accessibility. Manish [] dev […]

library_books

Predicting RNA binding residues from evolutionary information and sequence conservation

2010
BMC Genomics
PMCID: 3005934
PMID: 21143803
DOI: 10.1186/1471-2164-11-S4-S2

[…] n, window-based cross-validation can yield overly optimistic estimates of the performance of classifier relative to the estimates obtained using sequence-based cross-validation. RNAProB, BindN, RISP, PRINTR and PiRaNhA are predictors that report performance window-based k-fold cross-validation while Pprint and RNABindR report performance with sequence-based k-fold cross-validation. The predictors […]

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PRINTR institution(s)
Institute of Biophysics and Biochemistry, School of Life Science, Huazhong University of Science and Technology, Wuhan City, China

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