Pripper specifications

Information


Unique identifier OMICS_01675
Name Pripper
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Versioning


No version available

Publication for Pripper

Pripper citations

 (2)
library_books

Knowledge transfer learning for prediction of matrix metalloprotease substrate cleavage sites

2017
Sci Rep
PMCID: 5515926
PMID: 28720874
DOI: 10.1038/s41598-017-06219-7

[…] ailable as well, but tend to focus on prediction of substrate-cleavage sites for specific families or types of proteases. For example, several computational methods such as Cascleave (v1.0 and v2.0), Pripper, CasPredictor, GrasBCas, CASVM, and PCCS, were developed to predict the cleavage sites of caspases and/or granzyme B. Consequently, the accurate prediction of diverse MMP substrate-cleavage si […]

library_books

Developing a powerful In Silico tool for the discovery of novel caspase 3 substrates: a preliminary screening of the human proteome

2012
BMC Bioinformatics
PMCID: 3324375
PMID: 22269041
DOI: 10.1186/1471-2105-13-14

[…] condary structure features, of the cleaved sites based on SVM approach. Cascleave was built using a dataset of 370 substrates of the different caspases. Piippo et al [] described another tool (termed Pripper) using three different pattern recognition classifiers, namely: SVM, a decision tree based method known as J48, and the Random Forest classifier. The three classifiers were trained on 443 diff […]

Pripper institution(s)
Department of Information Technology, University of Turku, Turku, Finland

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