PRIPU specifications


Unique identifier OMICS_08900
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 0.1
Stability Stable
Maintained No


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Publication for PRIPU

PRIPU in publications

PMCID: 5657051
PMID: 29072138
DOI: 10.1186/s12859-017-1819-1

[…] [] developed the lncpro tool for lncrpi prediction based on van der waals propensities, hydrogen bonding and secondary structures extracted from lncrna-protein pairs., cheng et al. [] proposed the pripu approach that uses only positive and unlabeled examples to predict rpis. recently, suresh et al. [] employed svm to predict ncrna-protein interactions (ncrpis) by using the information […]

PMCID: 5350561
PMID: 28242756
DOI: 10.15252/embj.201694966

[…] respectively. the human zrf1 plasmid pcmv2a‐zrf1 was kindly provided by luciano di croce (crg, spain) and cloned into the pcdna3.1 mammalian expression vector in frame with the flag‐epitope tag. pripu‐s6k1 l149g (as‐s6k1), pcdna3‐flag‐zrf1 s47a and pcdna3‐flag‐zrf1 s47as49a mutants were generated by site‐directed mutagenesis using the quikchange site‐directed mutagenesis kit (stratagene). […]

PMCID: 4661811
PMID: 26540053
DOI: 10.3390/ijms161125952

[…] 30% sequence identity []. in several studies, authors employed the same dataset to compare the advantages and disadvantages of various methods. in particular, cheng et al. [] constructed a novel pripu dataset which differed from previous datasets. the pripu dataset contained positive and unlabeled, but not negative samples. such negative samples sometimes are not necessarily genuine negative […]

PMCID: 4719072
PMID: 26041786
DOI: 10.1093/bib/bbv031

[…] systems are used for evaluating the binding potential of a novel pair. rpiseq [], catrapid [], the method described in wang et al. [], lncpro [] and rpi-pred [] all follows these lines. the recent pripu method [] differs from the others by using statistical learning methods trained on only positive examples. the oli suite [] trains on high-throughput evidence including par-clip experiments, […]

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PRIPU institution(s)
Shanghai Key Lab of Intelligent Information Processing and School of Computer Science, Fudan University, Shanghai, China; Department of Computer Science and Technology, Tongji University, Shanghai, China

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