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Citations per year

Number of citations per year for the bioinformatics software tool PRISM

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This map represents all the scientific publications referring to PRISM per scientific context
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PRISM specifications


Unique identifier OMICS_03648
Alternative name Protein Interactions By Structural Matching
Interface Web user interface
Restrictions to use None
Input data Two protein structures
Input format PDB
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes


  • person_outline Attila Gursoy

Publications for Protein Interactions By Structural Matching

PRISM citations


Structural Pathways of Cytokines May Illuminate Their Roles in Regulation of Cancer Development and Immunotherapy

PMCID: 4074797
PMID: 24670367
DOI: 10.3390/cancers6020663

[…] milar interfaces to interact with their partners. Template-based techniques are more suitable for large-scale studies in terms of CPU time. A powerful template-based algorithm developed by our group, PRotein Interactions by Structural Matching (PRISM) employs recurring interfaces of protein-protein interactions whose 3D structures were previously resolved and are available in the PDB as knowledge- […]


The Structural Pathway of Interleukin 1 (IL 1) Initiated Signaling Reveals Mechanisms of Oncogenic Mutations and SNPs in Inflammation and Cancer

PLoS Comput Biol
PMCID: 3923659
PMID: 24550720
DOI: 10.1371/journal.pcbi.1003470

[…] The 3D structures of protein-protein complexes in the reconstructed IL-1 signaling pathway are predicted by using the PRISM (PRotein Interactions by Structural Matching) – tool (). PRISM is a large-scale protein-protein interaction prediction, modeling and structure assembly tool that previously was successfully applied to […]


Human Cancer Protein Protein Interaction Network: A Structural Perspective

PLoS Comput Biol
PMCID: 2785480
PMID: 20011507
DOI: 10.1371/journal.pcbi.1000601

[…] PRISM (protein interactions by structural matching) , is a web server to predict protein-protein interactions and protein interfaces. The prediction algorithm uses structural and evolutionary similarities to […]

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PRISM institution(s)
Center for Computational Biology and Bioinformatics and College of Engineering, Koc University, Istanbul, Turkey
PRISM funding source(s)
National Cancer Institute, National Institutes of Health (NIH) [HHSN261200800001E] (whole or in part); Intramural Research Program of the NIH, National Cancer Institute, Center for Cancer Research (in part); Scientific and Technological Research Council of Turkey (TUBITAK) [113E164]

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