PCSF specifications

Information


Unique identifier OMICS_19936
Name Prize-Collecting Steiner Forest
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A template network such as protein-protein interaction, protein-metabolite interaction or any other correlation-based interaction network.
Output data High-scoring neighborhoods to identify functional modules in the interactome.
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
License MIT License
Computer skills Advanced
Version 0.99.0
Stability Stable
Requirements Boost C++ library, igraph, visNetwork
Maintained Yes

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Maintainers


  • person_outline Murodzhon Akhmedov <>
  • person_outline Ivo Kwee <>

PCSF articles

PCSF institution(s)
Dalle Molle Institute for Artificial Intelligence Research (USI/SUPSI), Manno, Switzerland; Institute of Oncology Research (IOR), Bellinzona, Switzerland; Swiss Institute of Bioinformatics (SIB), Lausanne, Switzerland; Department of Biological Engineering, MIT, Cambridge, MA, USA
PCSF funding source(s)
Supported by the Swiss National Science Foundation (205321-147138/1), the National Institute of Health (U54-NS-091046 and U01-CA-184898).

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