Protocols

PRNA specifications

Information


Unique identifier OMICS_15867
Name PRNA
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Luonan Chen

Publication for PRNA

PRNA citations

 (2)
call_split

A Large Scale Assessment of Nucleic Acids Binding Site Prediction Programs

2015
PLoS Comput Biol
PMCID: 4683125
PMID: 26681179
DOI: 10.1371/journal.pcbi.1004639
call_split See protocol

[…] DISPLAR program was provided by Sanbo Qin and was run with default parameters. BindN and BindN+ were used by default parameters, while suffix “_RNA” and “_DNA” are RNA mode and DNA mode respectively. PRNA and Predict_RBP were trained on PRNA_R205 and BindN_R107 respectively, without cross-validation and applied with default parameters. DNABINDPROT was predicted with option “Fast 1” and DR_bind1 wa […]

library_books

Pathway mapping and development of disease specific biomarkers: protein based network biomarkers

2015
J Cell Mol Med
PMCID: 4407592
PMID: 25560835
DOI: 10.1111/jcmm.12447

[…] ntegrate selected genes or proteins into the knowledge-based networks via the combination of genomics, proteomics and bioinformatics, such as GRNInfer , MDCinfer , TRNInfer , Samo , MNAligner , PTG , PRNA , NOA , differential dependency network (DDN) , WGCNA , SurvNet or DiME , each of them has its own advantages and strength on basis of scientific needs and investigative goals, as summarized in […]

PRNA funding source(s)
This work was supported by the Chief Scientist Program of Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences (grant no. 2009CSP002), the National Natural Science Foundation of China (grant no. 10631070 and 60873205) and the Ministry of Science and Technology of China (grant no. 2006CB503905).

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