Pro-Origami protocols

View Pro-Origami computational protocol

Pro-Origami statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Structure visualization chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

Pro-Origami specifications

Information


Unique identifier OMICS_13634
Name Pro-Origami
Interface Web user interface
Restrictions to use None
Input data Protein structure, PDB files, PDB or SCOP identifier
Output data Protein structure cartoons
Output format SVG, PNG
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Alex Stivala <>

Publication for Pro-Origami

Pro-Origami in pipeline

2018
PMCID: 5784728
PMID: 29416568
DOI: 10.1186/s13100-018-0111-x

[…] despite being from inteinless hosts. each structure file was truncated to include the domain, or portion of the protein, with intein insertion. all shortened structure pdb files were uploaded to pro-origami software (http://munk.csse.unimelb.edu.au/pro-origami/) []. for conservation, a single full-length extein sequence was chosen as a query and uploaded to consurf []. an automatic multiple […]


To access a full list of citations, you will need to upgrade to our premium service.

Pro-Origami in publications

 (9)
PMCID: 5784728
PMID: 29416568
DOI: 10.1186/s13100-018-0111-x

[…] despite being from inteinless hosts. each structure file was truncated to include the domain, or portion of the protein, with intein insertion. all shortened structure pdb files were uploaded to pro-origami software (http://munk.csse.unimelb.edu.au/pro-origami/) []. for conservation, a single full-length extein sequence was chosen as a query and uploaded to consurf []. an automatic multiple […]

PMCID: 5738077
PMID: 29258562
DOI: 10.1186/s12900-017-0079-7

[…] []. the program was asked to generate eight motifs having 6–50 residues size., the secondary structures of limtap, tbmtap and humtap (pdbid: 1cg6) were detected using the stride program [] under the pro-origami web server ( http://munk.csse.unimelb.edu.au/pro-origami/; []). advanced options were used to exclude 310 helices and pi helices. topology diagrams were then generated and manually […]

PMCID: 5473940
PMID: 28622508
DOI: 10.1016/j.cell.2017.05.029

[…] plot: 98.9% of residues in favored and allowed regions) and packing quality (average z-score −1.04). pymol (http://www.pymol.org) was used for 3d visualization, analysis and figure preparation. pro-origami was used to create the 2-d cartoon topology schematic (). the target-template alignment was generated and annotated using espript v3 ()., the statistical significance of compaction […]

PMCID: 5333176
PMID: 28251875
DOI: 10.1186/s12859-016-1449-z

[…] 3d representation of the same data., according to stivala et al. [], there are four systems specializing in automatic generation of protein structure diagrams. the main contribution of their system, pro-origami, lies in novel approach to automatic creation of diagram layout of protein structure cartoons. this system provides diagrams which are clear, accurate, interactive, and editable. however, […]

PMCID: 4915002
PMID: 27324530
DOI: 10.1038/srep28226

[…] structures were superimposed using the consurf server (http://consurf.tau.ac.il/) or the superpose program of the ccp4 suite. the folds of mtra and meth family proteins () were compared using the pro-origami server (http://munk.csse.unimelb.edu.au/pro-origami/)., how to cite this article: wagner, t. et al. mtra of the sodium ion pumping methyltransferase binds cobalamin in a unique mode. sci. […]


To access a full list of publications, you will need to upgrade to our premium service.

Pro-Origami institution(s)
Department of Computer Science and Software Engineering, The University of Melbourne Parkville Campus, Victoria, Australia; Clayton School of Information Technology Clayton, Victoria, Australia; Department of Biochemistry and Molecular Biology, ARC Centre of Excellence in Structural and Functional Microbial Genomics, Monash University Clayton Campus, Clayton, Victoria, Australia
Pro-Origami funding source(s)
The Australian Research Council, NICTA, ARC Federation Fellow, Honorary National Health and Medical Research Council Principal Research Fellow, Australian Postgraduate Award.

Pro-Origami reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Pro-Origami