PAINTOR specifications

Unique identifier:
OMICS_11039
Software type:
Framework/Library
Restrictions to use:
Academic or non-commercial use
Output data:
The main output of PAINTOR is a probability for each variant to be causal that can be used for selection of SNPs to be tested for biological causality in functional assays.
Computer skills:
Advanced
Stability:
Stable
Source code URL:
https://codeload.github.com/gkichaev/PAINTOR_V2.1/zip/master
Name:
Probabilistic Annotation INtegraTOR
Interface:
Command line interface
Input data:
PAINTOR takes as input the following data for each set of SNPs at a locus: (i) summary association statistics (Z-scores); linkage disequilibrium matrix/matrices (pairwise Pearson correlations coefficients between each SNP) and (iii) functional annotation matrix (binary indicator of annotation membership).
Operating system:
Unix/Linux
Version:
2.1
Requirements:
Eigen, Nlopt
Maintained:
Yes

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PAINTOR support

Maintainer

  • Bogdan Pasaniuc <>

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Publications

Institution(s)

Bioinformatics Interdepartmental Program, University of California, Los Angeles, Los Angeles, CA, USA; Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA; Department of Pathology and Laboratory Medicine, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA

Funding source(s)

This research was supported by NIH grants R01-HG006399, R01-GM53275, and R21-CA182821.

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