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Probabilistic INTegration of CAncer GEnomics data PINCAGE

Allows candidate biomarker identification and sample classification. PINCAGE is a flexible model for integration of multiple gene-level genomic data types. It separately models the relationships between gene expression and methylation of two gene regions: promoter and gene body. It also models the distribution of data types and the sampling of the underlying high-throughput measurements.

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PINCAGE forum

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PINCAGE classification

PINCAGE specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
R
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Maintained:
Yes

PINCAGE distribution

versioning

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No versioning.

PINCAGE support

Maintainers

  • Michal Switnicki <>
  • Jakob Pedersen <>

Credits

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Publications

Institution(s)

Department of Molecular Medicine (MOMA), Aarhus University Hospital, Aarhus, Denmark; Bioinformatics Research Centre (BiRC), Aarhus University, Aarhus, Denmark

Funding source(s)

Supported by The Danish Strategic Research Council (Innovation Fund Denmark) and the Sapere Aude program of the Danish Council for Independent Research Medical Sciences.

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