Probalign specifications

Information


Unique identifier OMICS_00985
Name Probalign
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/Probalign

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Maintainer


  • person_outline Usman Roshan <>

Additional information


Standalone: http://probalign.njit.edu/standalone.html

Information


Unique identifier OMICS_00985
Name Probalign
Interface Web user interface
Restrictions to use None
Input data Some unaligned protein or nucleic acid sequences.
Input format FASTA
Output format FASTA,PDF
Computer skills Basic
Stability Stable
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/Probalign

Maintainer


  • person_outline Usman Roshan <>

Additional information


Standalone: http://probalign.njit.edu/standalone.html

Probalign articles

Probalign citation

2013
PMCID: 3832898

[…] of 1.2. only single copy core genes were used (i.e. clusters containing paralogs were excluded). the nucleotide sequences corresponding to each set of homologous core genes were aligned using probalign [84]. alignment columns with a posterior probability <0.6 were removed, and alignments with >50% of the sites removed were discarded from the analysis. using each of the alignments […]

Probalign institution(s)
Department of Computer Science, New Jersey Institute of Technology, University of North Carolina, Charlotte, NC, USA; Department of Computer Science and Bioinformatics Research Center, University of North Carolina, Charlotte, NC, USA
Probalign funding source(s)
Supported, in part, by NIH R01 GM073082-0181.

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