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proBAM

Allows to store and analyze peptide spectrum matches (PSMs) within the context of the genome. proBAM is built upon the SAM format and its compressed binary version, BAM, with necessary modifications to accommodate information specific to proteomics data such as PSM scores and confidence, charge states and peptide level modifications, both artefactual and PTMs (post-translational modifications).

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proBAM classification

proBAM specifications

proBAM support

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This tool is not maintained anymore.

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Publications

Institution(s)

Department of Biomedical Informatics, Department of Biochemistry, Department of Cancer Biology, Vanderbilt University, School of Medicine, Nashville, TN, USA; Jim Ayers Institute for Precancer Detection and Diagnosis, Vanderbilt-Ingram Cancer Center, Nashville, TN, USA

Funding source(s)

Supported by the National Institutes of Health grant U24CA159988.

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