ProbCD specifications

Information


Unique identifier OMICS_18769
Name ProbCD
Alternative name Probabilistic Categorical Data analysis
Interface Web user interface
Restrictions to use None
Input data A microarray data.
Input format TSV
Programming languages R
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Ilya Shmulevich
  • person_outline Ricardo Vencio

Information


Unique identifier OMICS_18769
Name ProbCD
Alternative name Probabilistic Categorical Data analysis
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainers


  • person_outline Ilya Shmulevich
  • person_outline Ricardo Vencio

Publication for Probabilistic Categorical Data analysis

ProbCD citation

library_books

Investigating the concordance of Gene Ontology terms reveals the intra and inter platform reproducibility of enrichment analysis

2013
BMC Bioinformatics
PMCID: 3644270
PMID: 23627640
DOI: 10.1186/1471-2105-14-143

[…] statistics and permutation test to identify significantly enriched gene sets []. In addition, other statistical methods including significance analysis of function and expression (SAFE) [], BayGO [], ProbCD [], EasyGO [], ProfCom [], GlobalANCOVA [], GOEAST [] and LRpath [] were also developed for enrichment analysis.Based on the methods mentioned above, researchers can subsequently reveal the pat […]

ProbCD institution(s)
Institute for Systems Biology, Seattle, WA, USA
ProbCD funding source(s)
Supported by NIH grants U54-AI54253, U19- AI057266 and P50-GMO-76547.

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