PROBer specifications


Unique identifier OMICS_28578
Name PROBer
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Some raw reads obtained separately from a chemically treated sample, containing information about modification probabilities, and from a mock-treated control, informing about noise parameters.
Output data Some estimated transcript abundances and isoform-specific modification profiles.
Operating system Unix/Linux, Mac OS
Programming languages C++
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.3.1
Stability Stable
Maintained Yes




No version available


  • person_outline Lior Pachter

Additional information

Publication for PROBer

PROBer institution(s)
Center for RNA Systems Biology, Berkeley, CA, USA; Department of Molecular and Cell Biology University of California, Berkeley, CA, USA; Department of Biomedical Engineering and Genome Center, University of California, Davis, CA, USA; Departments of Biology and Computing & Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA
PROBer funding source(s)
Supported by NIH grants R01 HG006129 and R00 HG006860, and by the Center for RNA Systems Biology at UC Berkeley (NIH P50GM102706 grant) and by NIH Molecular Biophysics Training grant (NIH GM08295).

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