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ProbeSelect specifications

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Unique identifier OMICS_00836
Name ProbeSelect
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for ProbeSelect

ProbeSelect in publications

 (6)
PMCID: 4605304
PMID: 26261209
DOI: 10.1093/nar/gkv814

[…] hjay were normalized using ‘probe scaling’ method and background corrected with probeeffect from genebase (pmid: 18984598). gene expression index was computed from probes that were selected using probeselect from genebase (pmid: 18984598). the gene expression signal was computed using these probes. genes were considered expressed if mean intensity ≥500. genes were considered as regulated […]

PMCID: 4005683
PMID: 24623796
DOI: 10.1093/nar/gku151

[…] (hjay) was normalized using the ‘probe scaling’ method. the background was corrected with probeeffect from genebase (). the gene expression index was computed from probes that were selected using probeselect from genebase (). the gene expression signals were computed using these probes. genes were considered expressed if the mean intensity was ≥500. genes were considered regulated if (i) […]

PMCID: 3866160
PMID: 24358235
DOI: 10.1371/journal.pone.0082895

[…] arrays (hjay) was normalized using the “probe scaling” method. the background was corrected with probeeffect from genebase []. the gene expression index was computed from probes were selected using probeselect from genebase []. the gene expression signals were computed using these probes. genes were considered expressed if the mean intensity was ≥ 500. genes were considered regulated if (1) […]

PMCID: 3616728
PMID: 23393189
DOI: 10.1093/nar/gkt063

[…] arrays was normalized using the ‘probe scaling’ method. the background was corrected with probeeffect from genebase (). the gene expression index was computed from probes that were selected using probeselect from genebase (). the gene expression signals were computed using these probes. genes were considered expressed if the mean intensity was ≥500. genes were considered regulated if (i) […]

PMCID: 3128067
PMID: 21627845
DOI: 10.1186/1471-2164-12-280

[…] applications such as gene identification, pcr (polymerase chain reaction) amplification, or dna microarrays., many software programs have been written to construct good dna oligonucleotides, such as probeselect [], probesel [], promide [], oligoarray [,], arrayoligoselector [], oligowiz [], roso [], goarrays [], and prodesign []. one crucial issue in designing good oligonucleotides […]

ProbeSelect institution(s)
Patient Stratification group and Genetics and Genomics group, Biogen Idec, Cambridge, MA, USA

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