ProbMetab statistics
ProbMetab specifications
Information
| Unique identifier | OMICS_02407 |
|---|---|
| Name | ProbMetab |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux, Mac OS, Windows |
| Programming languages | R |
| Computer skills | Advanced |
| Stability | Stable |
| Maintained | Yes |
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Versioning
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Publication for ProbMetab
library_books
ProbMetab: an R package for Bayesian probabilistic annotation of LC-MS-based metabolomics.
2014 Bioinformatics
PMCID: 3998140
PMID: 24443383
DOI: 10.1093/bioinformatics/btu019
ProbMetab citation
library_books
From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics
2017
GigaScience
PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037
[…] to build networks that can be visualized in pdf or exported to cytoscape. this can be a very useful approach to identify related compounds and associate them to metabolic pathways. similarly, probmetab [] is an r package for probabilistic annotation of compounds based on the method developed by rogers et al. (2009) [] that incorporates information on possible biochemical reactions […]
ProbMetab institution(s)
LabPIB, Department of Computing and Mathematics FFCLRP-USP, University of Sao Paulo, Ribeirao Preto, Brazil; INRA UMR1331, Toxalim, Research Centre in Food Toxicology, Universit de Toulouse, INSA, UPS, INP
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