ProbMetab specifications
Information
| Unique identifier | OMICS_02407 |
|---|---|
| Name | ProbMetab |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux, Mac OS, Windows |
| Programming languages | R |
| Computer skills | Advanced |
| Stability | Stable |
| Maintained | Yes |
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Publication for ProbMetab
ProbMetab: an R package for Bayesian probabilistic annotation of LC–MS-based metabolomics
ProbMetab citations
(2)Navigating freely available software tools for metabolomics analysis
[…] t et al. ), KEGG (Kanehisa et al. ), LMSD (Sud et al. ), BioCyc (Caspi et al. ) and DrugBank (Wishart et al. ) is then used for putative annotation.Implemented in R, both MetAssign (Daly et al. ) and ProbMetab (Silva et al. ) use Bayesian approaches to putatively annotate peaks. MetAssign is a probabilistic putative metabolite identification algorithm, implemented in mzMatch (Scheltema et al. ) th […]
From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics
[…] samples to build networks that can be visualized in PDF or exported to Cytoscape. This can be a very useful approach to identify related compounds and associate them to metabolic pathways. Similarly, ProbMetab [] is an R package for probabilistic annotation of compounds based on the method developed by Rogers et al. (2009) [] that incorporates information on possible biochemical reactions between […]
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