ProbMetab statistics

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Citations per year

Number of citations per year for the bioinformatics software tool ProbMetab

Tool usage distribution map

This map represents all the scientific publications referring to ProbMetab per scientific context
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Associated diseases


Popular tool citations

chevron_left Metabolite identification Chromatogram alignment Peak detection Noise filtering Statistical analysis Spectral visualization chevron_right
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ProbMetab specifications


Unique identifier OMICS_02407
Name ProbMetab
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes




No version available

Publication for ProbMetab

ProbMetab citations


Navigating freely available software tools for metabolomics analysis

PMCID: 5550549
PMID: 28890673
DOI: 10.1007/s11306-017-1242-7

[…] t et al. ), KEGG (Kanehisa et al. ), LMSD (Sud et al. ), BioCyc (Caspi et al. ) and DrugBank (Wishart et al. ) is then used for putative annotation.Implemented in R, both MetAssign (Daly et al. ) and ProbMetab (Silva et al. ) use Bayesian approaches to putatively annotate peaks. MetAssign is a probabilistic putative metabolite identification algorithm, implemented in mzMatch (Scheltema et al. ) th […]


From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics

PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] samples to build networks that can be visualized in PDF or exported to Cytoscape. This can be a very useful approach to identify related compounds and associate them to metabolic pathways. Similarly, ProbMetab [] is an R package for probabilistic annotation of compounds based on the method developed by Rogers et al. (2009) [] that incorporates information on possible biochemical reactions between […]

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ProbMetab institution(s)
LabPIB, Department of Computing and Mathematics FFCLRP-USP, University of Sao Paulo, Ribeirao Preto, Brazil; INRA UMR1331, Toxalim, Research Centre in Food Toxicology, Universit de Toulouse, INSA, UPS, INP

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