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chevron_left Metabolite identification Chromatogram alignment Peak detection Noise filtering Statistical analysis Spectral visualization chevron_right
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ProbMetab specifications

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Unique identifier OMICS_02407
Name ProbMetab
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for ProbMetab

ProbMetab citation

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From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics

2017
GigaScience
PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] to build networks that can be visualized in pdf or exported to cytoscape. this can be a very useful approach to identify related compounds and associate them to metabolic pathways. similarly, probmetab [] is an r package for probabilistic annotation of compounds based on the method developed by rogers et al. (2009) [] that incorporates information on possible biochemical reactions […]


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ProbMetab institution(s)
LabPIB, Department of Computing and Mathematics FFCLRP-USP, University of Sao Paulo, Ribeirao Preto, Brazil; INRA UMR1331, Toxalim, Research Centre in Food Toxicology, Universit de Toulouse, INSA, UPS, INP

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