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chevron_left Metabolite identification Chromatogram alignment Peak detection Noise filtering Statistical analysis Spectral visualization chevron_right

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ProbMetab specifications


Unique identifier OMICS_02407
Name ProbMetab
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes




No version available

Publication for ProbMetab

ProbMetab citation


From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics

PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] to build networks that can be visualized in pdf or exported to cytoscape. this can be a very useful approach to identify related compounds and associate them to metabolic pathways. similarly, probmetab [] is an r package for probabilistic annotation of compounds based on the method developed by rogers et al. (2009) [] that incorporates information on possible biochemical reactions […]

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ProbMetab institution(s)
LabPIB, Department of Computing and Mathematics FFCLRP-USP, University of Sao Paulo, Ribeirao Preto, Brazil; INRA UMR1331, Toxalim, Research Centre in Food Toxicology, Universit de Toulouse, INSA, UPS, INP

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