ProCKSI specifications


Unique identifier OMICS_03668
Name ProCKSI
Alternative name Protein (Structure) Comparison, Knowledge, Similarity and Information
Software type Pipeline/Workflow
Interface Web user interface
Restrictions to use Academic or non-commercial use
Programming languages C++, Java, Perl
Computer skills Basic
Version 8.7.1
Stability Stable
Maintained Yes


  • Universal Similarity Metric
  • Maximum Contact Map Overlap
  • Combinatorial Extension
  • FAST Alignment and Search Tool
  • SCOP
  • PDB Obsoletes
  • ProCKSI-Viz
  • ParsePDB
  • qclust


  • person_outline Daniel Barthel <>
  • person_outline Jacek Blazewicz <>
  • person_outline Jonathan D. Hirst <>
  • person_outline Natalio Krasnogor <>
  • person_outline ProCKSI Team <>

Additional information

ProCKSI articles

ProCKSI institution(s)
Institute of Cell Biophysics, Russian Academy of Sciences, Pushchino, Moscow Region, Russia; Biological Faculty, Lomonosov Moscow State University, Moscow, Russia
ProCKSI funding source(s)
Supported by the Biotechnology and Biological Sciences Research Council (BBSRC) for grant BB/C511764/1, the Engineering and Physical Sciences Research Council (EPSRC) for grants GR/T07534/01 and EP/ D061571/1 and a grant from the Ministry of Higher Education in Poland.

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