ProDesign statistics

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Citations per year

Number of citations per year for the bioinformatics software tool ProDesign

Tool usage distribution map

This map represents all the scientific publications referring to ProDesign per scientific context
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Associated diseases


Popular tool citations

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ProDesign specifications


Unique identifier OMICS_00837
Name ProDesign
Interface Web user interface
Restrictions to use None
Input data Clusters of homologous sequences
Computer skills Basic
Stability Stable
Maintained Yes

Publication for ProDesign

ProDesign citations


Volumetric analysis of hand, reciprocating and rotary instrumentation techniques in primary molars using spiral computed tomography: An in vitro comparative study

PMCID: 5883471
PMID: 29657521
DOI: 10.4103/ejd.ejd_247_17

[…] ng Mann–Whitney U-test [].The mean canal volume difference was the highest in Group V (ProTaper files) followed by Group II (Manual files with reciprocating handpiece) and least seen in the Group IV (Prodesign pediatric rotary files). Intergroup comparison of mean canal volume showed statistically significant difference between Groups II versus IV, Groups III versus V, and Groups IV versus V. The […]


Cyclic Fatigue Resistance of WaveOne Gold, ProDesign R and ProDesign Logic Files in Curved Canals In Vitro

PMCID: 5722121
PMID: 29225643
DOI: 10.22037/iej.v12i4.17494

[…] perator using a 1:6 reduction handpiece (Sirona Dental Systems GmbH, Bensheim, Germany) operated by a torque-controlled motor (Silver Reciproc, VDW, Munich, Germany). For the WaveOne Gold primary and ProDesign R files, the "Reciproc All" pre-setting program was selected. For the ProDesign Logic files, the "Dr's" pre-setting program at 350 rpm and 4 N torque were used. For ProDesign Logic files, a […]


Seeds for effective oligonucleotide design

BMC Genomics
PMCID: 3128067
PMID: 21627845
DOI: 10.1186/1471-2164-12-280

[…] sequencing data, such as SHRiMP [], PerM [], SToRM []. However, there seems to be no software for oligonucleotide design that uses multiple spaced seeds. Most of them use BLAST and we found that only ProDesign [] uses a single transition-constrained seed.Our goal is to show that multiple spaced seeds perform the best for the task of oligonucleotide design. We shall describe a sound framework to ev […]


An empirical study of choosing efficient discriminative seeds for oligonucleotide design

BMC Genomics
PMCID: 2788383
PMID: 19958494
DOI: 10.1186/1471-2164-10-S3-S3

[…] l complexity [-] as well as adapting the seeds for more specific biological sequences [,]. Recently, oligo design programs have been adopting such enhanced seeding algorithms. A oligo design programs ProDesign [], used YASS [] to improve its computational speed.Despite the possibility of speeding up the design time of a seed, a measure of evaluating seeds regarding how adequate and efficient they […]

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ProDesign institution(s)
Institute of Computing Technology, Chinese Academy of Sciences, China; Ontario Cancer Institute, University Health Network, Toronto, Canada; Department of Medical Biophysics, University of Toronto, Canada
ProDesign funding source(s)
Grants NSFC 60372040 and NSFC 90612019, State Scholarship Fund Award of China, and a CIHR grant

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