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Associated diseases

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ProFASTA specifications

Information


Unique identifier OMICS_24874
Name ProFASTA
Software type Pipeline/Workflow
Interface Web user interface
Restrictions to use None
Input data A sequence of protein.
Input format FASTA
Output data A sequence of protein.
Output format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Piet de Groot <>

Publication for ProFASTA

ProFASTA in publications

 (3)
PMCID: 4454578
PMID: 26038837
DOI: 10.1371/journal.pone.0128680

[…] the hydrophilic or hydrophobic character of a protein along its amino acid sequence (http://www.bioinformatics.org/sms2/protein_gravy.html). for pipeline filtering of proteins the new web tool profasta was also used (http://www.bioinformatics.nl/tools/profasta/). functional domain analysis was performed using interpro (http://www.ebi.ac.uk/interpro/). protein sequence similarities […]

PMCID: 4392113
PMID: 25589417
DOI: 10.1007/s00294-014-0471-9

[…] topic is funded by the austrian science fund (fwf): grants p20559 and v263-b20. we would like to thank piet de groot (university of castilla-la mancha, spain) for help with searching patterns in the profasta […]

PMCID: 4055668
PMID: 24922533
DOI: 10.1371/journal.pone.0099113

[…] the kyte-doolittle hydropathy plot was generated using a webserver at the university of virginia (http://fasta.bioch.virginia.edu/fasta_www2/fasta_www.cgi?rm=misc1). for pattern scanning we used profasta (http://www.bioinformatics.nl/tools/profasta/) and for homology searching, ncbi-blast (http://blast.ncbi.nlm.nih.gov/blast.cgi)., the predicted amino acid sequence (residues 1-1039 […]

ProFASTA institution(s)
Regional Center for Biomedical Research, Albacete Science and Technology Park, University of Castilla - La Mancha, Albacete, Spain

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