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A C - phd student
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A C

phd student
University of Quebec • University of Quebec at Montreal • MontrĂ©al • Canada

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • ChIP-seq analysis
Languages
  • French

Fields of interest

De novo sequencing analysis
Refines regulatory motifs. LMMO consists of a large-margin-type algorithm that…
Predicts AsCpf1 (Cpf1 from Acidaminococcus sp. BV3L6) activity based on target…
Permits users to classify contigs. SCOP is a scaffolding method that optimizes…
RNA-seq analysis
Enables transcriptome reconstruction from RNA-seq reads. IsoTree is a de novo…
Enables users to compare the global and local biological signal of networks.…
Predicts long non-coding RNAs (lncRNA) mechanisms by using both RNA-RNA and…
ChIP-seq analysis
Implements an indexing data structure for compacted de Bruijn graph (dBG) and…
Analyzes the association of gene expression indices with interval times. GAIT…
Allows to compress DNA sequences, quality scores and read identifiers. FaStore…