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Adnan Niazi - Genomic & Transcriptomic Analysis
Open to new opportunities
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Open to new opportunities

Adnan Niazi

Genomic & Transcriptomic Analysis
Swedish University of Agricultural Sciences • Uppsala • Sweden

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • RNA-seq analysis
Languages
  • English
Programming languages
  • Python
  • R

Fields of interest

WGS analysis
Provides a visualization engine module. genomeview was developed for both…
Provides an online platform for collecting, managing, analyzing, visualizing…
Integrates predictions of several popular scores (SIFT, Polyphen-2, LRT,…
De novo sequencing analysis
Maps a read against a reference region if and only if its estimated alignment…
Estimates haplotypes in polyploid parent-offspring trios. TriPoly is an…
Identifies putatively cooperative transcription factor (TF) pairs co-occurring…
RNA-seq analysis
Compares differential abundance and expression methods on a targeted dataset.…
Processes raw reads to count tables for RNA-seq data using Unique Molecular…
Provides a de novo assembler. STAble is composed of three modules: (1)…