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Agata Szymanek - PhD student
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Agata Szymanek

PhD student
VUmc Cancer Center Amsterdam 

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • NMR-based proteomics analysis
  • English
Programming languages
  • R

Fields of interest

WGS analysis
Prioritizes the underlying mutated genes of rare hereditary disorders. Divine…
Provides an approach for integrating transcript assemblies. Mikado is a…
Allows users to handle and solve the single individual haplotyping (SIH)…
RNA-seq analysis
Provides a collection of clustering similarity measures for all three…
Calls peaks in ChIP-seq data with biological replicates. BinQuasi jointly…
Stores projects and creates a directory of analysed results and parameter.…
NMR-based proteomics analysis
Assists users to perform spectra analysis. Dumpling comprises the following…
Automates the elimination of noise peaks. Filt Robot employs convolutional…
Performs general ensemble-based validation step and a simple and…