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Agathe Czapla - miRNA research
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Agathe Czapla

miRNA research
Heinrich Heine University Düsseldorf • Düsseldorf • Germany

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • Gene expression array analysis
  • Protein interaction analysis
Languages
  • German

Fields of interest

RNA-seq analysis
Makes base calls in low coverage regions. PBHoover is a consensus and…
Facilitates phylostratigraphic analysis. phylostratr automates sequence…
Predicts isoform expression on entirely held-out libraries. APARENT is a…
Gene expression array analysis
Supports the validation of experiments by annotating variants and prioritizing…
Enables the application of gene set tests (GST) in the absence of large parts…
Consists of a dimension reduction technique designed for complex data sets with…
Protein interaction analysis
Produces vector space embeddings. This method combines data from literature and…
Evaluates binding energy changes upon amino-acid mutations. EasyE is a global…
Enables network discovery from perturbed expression data. This approach…