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Alban Ramette - NGS nanopore sequencing - clinical microbiology
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Alban Ramette

NGS nanopore sequencing - clinical microbiology
University of Bern • Bern • Switzerland

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • aCGH data analysis
Languages
  • English
  • French
  • German
  • Italian
Programming languages
  • Perl
  • Python
  • R

Fields of interest

WGS analysis
Provides a continuous wavelet dynamic time warping algorithm for unbalanced…
Manages primary next generation sequencing (NGS) reads to produce data needed…
Serves for Illumina short read sequencing data. PriLive allows users to remove…
De novo sequencing analysis
Serves to ChIP-seq Wig data. Wig is a standard file format, which in this…
Makes base calls in low coverage regions. PBHoover is a consensus and…
Predicts de novo profile generation based on sequence context. SPBuild…
aCGH data analysis
Analyzes next-generation sequencing (NGS) from experiments using unique…
Combines several steps for a high-quality probe and primer design for a variety…
Enables spatial mapping of RNA-seq transcript data onto high resolution tissue…