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avilella - Bioinformatics Scientist
Open to new opportunities
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Open to new opportunities

avilella

Bioinformatics Scientist
Cambridge Epigenetix

Skills and expertise

Fields of interest
  • WGS analysis
  • BS-seq analysis
  • DNA methylation array analysis
Languages
  • English
  • Spanish
Programming languages
  • Perl
  • Python
  • R

Favorites and Collections

Favorites

SAMtools
Desktop
MACS
Desktop
MEDIPS
Desktop
MEDME
Desktop
BWA
Desktop
FastQC
Desktop
Scramble
Desktop
Preseq
Desktop
Sambamba
Desktop
deepTools
Desktop
Web
Seqtk
Desktop
THOR
Desktop
MixChIP
Desktop
Bwa-meth
Desktop
QSEA
Desktop
Goleft
Desktop
fastp
Desktop

Collections

Reviews and Discussions

LATEST REVIEWS

iNPS 2017-10-09, 09:24:56
Promising software validated by 3rd party scientist but the website is down: http://www.picb.ac.cn/hanlab/ The cached version points to a page with the software to download, but link is also…
DANPOS 2017-10-05, 17:27:27
Easy to download and run. Minimal dependencies.

LATEST DISCUSSIONS

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TOOLS MAINTAINED

nucChIP

Desktop

nucChIP

(0) 0 discussion(s)
Uses the power of ChIP-seq protocols based on enzymatic digestion. nucChIP is a set of Python and R scripts designed to be easy to use by both computational and experimental biologists. Regular…

Fields of interest

WGS analysis
Detects and visualizes mutations in a given file. MutScan creates read pile-up…
Provides a simulation tool of single nucleotide polymorphism (SNP) clusters for…
Allows users to infer population structure. POPSTR is a Bayesian integrative…
BS-seq analysis
Provides solution for clustering sparse single-cell DNA methylation data.…
Incorporates tools and workflows for the analysis of environmental DNA (eDNA)…
Provides a deep neural network base caller for nanopore sequencing. Chiron…
DNA methylation array analysis
Consists of a genomic context explorer. GeneSpy is a program that aims to…
Models data to maintain realistic patterns of variation and correlation. FANGS…
Assists users to detect gene probes with different means or variances between…