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Alessandro Lagana - Precision Oncology and Integrative Cancer Genomics
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Alessandro Lagana

Precision Oncology and Integrative Cancer Genomics
Mount Sinai Health System • Icahn School of Medicine at Mount Sinai • New York City • United States of America

Skills and expertise

Fields of interest
  • WES analysis
  • RNA-seq analysis
  • scRNA-seq analysis
Languages
  • English
  • Italian
Programming languages
  • Perl
  • Python
  • R
  • Ruby

Fields of interest

WES analysis
Extends the Integrative Genomics Viewer (IGV) with feature for curation…
Detects structural variants (SVs) and insertion and deletion genome-wide…
Allows users to conduct large-scale comparisons of their results with thousands…
RNA-seq analysis
Fragments pathways into functional modules and uses these to predict…
Allows users to handle sequencing data with unique molecular identifiers…
Supplies a set of features dedicated to quality check (QC) of next generation…
scRNA-seq analysis
Leads to low-dimensional representations of the data that account for zero…
Allows users to filter, convert and combine multiple data files produced by…
Permits visual integration of KEGG pathway maps and expression profile data.…