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Alexandra Kahn - Grad Student
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Alexandra Kahn

Grad Student
University of California System • University of California, Berkeley • Berkeley • United States of America

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • aCGH data analysis
  • English

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Fields of interest

WGS analysis
Measures the evidence of aggregate-level pleiotropic association and estimates…
Clusters variants into clones. QuantumClone applies an expectation-maximization…
Maps ethyl methanesulfonate (EMS)-induced mutations in forward genetic screens…
De novo sequencing analysis
Serves for the classification of metagenomics data. Ph-CNN contains a deep…
Generates and analyzes whole or partial viral genomes from next-generation…
Enumerates conserved blocks that are centered in small components of a given…
aCGH data analysis
Combines several steps for a high-quality probe and primer design for a variety…
Enables spatial mapping of RNA-seq transcript data onto high resolution tissue…
Consists of a Bayesian, unsupervised, integrative clustering model for…