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Alexey Afonin - Microbiome interactions in Legumes
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Alexey Afonin

Microbiome interactions in Legumes
Department of Agricultural Sciences • All-Russian Research Institute of Agricultural Microbiology • Pushkin • Russia

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Gene expression array analysis
Languages
  • English
  • Russian
Programming languages
  • Python
  • R

Favorites and Collections

Favorites

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Fields of interest

De novo sequencing analysis
Leverages adjacent normal tissue from tumor biopsies. LumosVar has seven steps:…
Consists of a method for comparing trees whose labels belong to a pre-defined…
Allows users to perform reference-assisted assembly or improve genome assembly…
RNA-seq analysis
Provides a sparse network component analysis algorithm. SparseNCA is a two…
Provides a neighbor protein structure retrieval method. ContactLib scans…
Provides a predictor that combines the deleteriousness index of the artificial…
Gene expression array analysis
Enables spatial mapping of RNA-seq transcript data onto high resolution tissue…
Carries out gene expression correlation analysis. GECO is a web server that…
Provides a collection of clustering similarity measures for all three…