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ostrokach - PhD Student
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ostrokach

PhD Student
University of Toronto • Toronto • Canada

Skills and expertise

Fields of interest
  • Genome edition
  • NMR-based proteomics analysis
  • Protein interaction analysis
Languages
  • English
  • Russian
Programming languages
  • Cython
  • Python
  • Rust

Favorites and Collections

Favorites

COSMIC
Dataset
dbNSFP
Dataset
PROVEAN
Desktop
Web
Gene3D
Dataset
Rosetta software suite
Desktop
mentha
Web
Desktop
CD-HIT
Desktop
Web
SKEMPI
Dataset
ICGC
Dataset
CellProfiler
Desktop
u-track
Desktop
ProTherm
Dataset
Platinum
Dataset
ENCoM
Web
Desktop
FTDock
Desktop
OSPREY
Desktop
IID
Dataset
ELASPIC
Web
Desktop
AB-Bind
Dataset
OncoKB
Dataset
FireProt
Web

Collections

Reviews and Discussions

LATEST REVIEWS

mentha 2017-09-28, 01:14:02
Great source of protein-protein interaction data mapped to UniProt protein names.
OSPREY 2017-09-27, 03:04:44
Promising alternative to Rosetta with a liberal license.

LATEST DISCUSSIONS

Open
NewProt 2017-09-30, 20:04:55
0 comments
In the paper [NewProt – a protein engineering…
Open
CLICK 2017-09-27, 03:19:31
0 comments
The "Type" annotation for click should include "Desktop"

Bioinformatics projects

Fields of interest

Genome edition
Serves as a calculation and visualization tool for high-throughput CRISPR…
Examines and evaluates sequencing reads from clustered regularly interspaced…
Processes batch analysis of CRISPR edits using Sanger data. ICE can quantify…
NMR-based proteomics analysis
Assists users to perform spectra analysis. Dumpling comprises the following…
Automates the elimination of noise peaks. Filt Robot employs convolutional…
Predicts absolute per-residue fluctuation from a three-dimensional protein…
Protein interaction analysis
Gathers results from a global aligner to improve the robustness to noise and…
Allows users to select characteristics from multi-omics data. CCAFS is a…
Constructs and analyzes the molecular surface (MS) of nanoscopic systems.…