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Alper Celik

Indoc Research • Toronto • Canada

Skills and expertise

Fields of interest
  • Genome edition
  • WGS analysis
  • RNA-seq analysis
  • English
Programming languages
  • Python
  • R
  • Shell (Bash)

Fields of interest

Genome edition
Identifies, quantifies and visualizes genuine genome editing events form CRIPR…
Creates and picks single-guide RNAs (sgRNAs) or template sequences for knockout…
Performs analysis, visualization and comparison of sequencing data from genome…
WGS analysis
Reconstructs tumor’s timelines. Palimpsest gathers computational methods…
Clusters variants into clones. QuantumClone applies an expectation-maximization…
Provides a general framework for Bayesian inference of reticulate evolution.…
RNA-seq analysis
Serves to ChIP-seq Wig data. Wig is a standard file format, which in this…
Provides several tools for processing phylogenetic. Gappa can automatically…
Gathers a set of statistical functions dedicated to the evaluation of…