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Amanda Brenner - Reasearch Assistant
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Amanda Brenner

Reasearch Assistant
Portland State University • Portland • United States of America

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • Metagenomic sequencing analysis
Languages
  • English

Favorites and Collections

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Collections

Fields of interest

WGS analysis
Measures epistatic interactions on a genome-wide level based on genomic data.…
Maps ethyl methanesulfonate (EMS)-induced mutations in forward genetic screens…
Allows to detect gene families in transcriptomes under strong selection. FUSTr…
De novo sequencing analysis
Provides independent C++ implementations of the SUPERB algorithm for counting…
Forecasts disease candidate genes. The approach is composed of a learning and a…
Reduces the number of misassemblies in a genome sequence assembly. Tigmint uses…
Metagenomic sequencing analysis
Allows users to test the mediation effect of the human microbiome. MedTest is a…
Identifies structural variation across (1) a collection of assemblies and (2) a…
Supplies an approach for orthology inference based on a method that mixes…