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Anupama Engineer - Project Scientist
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Anupama Engineer

Project Scientist
Agharkar Research Institute • Pune • India

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • Metagenomic sequencing analysis
Languages
  • English

Fields of interest

WGS analysis
Evaluates rare short tandem repeat (STR) expansions from whole genome…
Identifies origin of transfer sites (oriTs) in bacterial mobile genetic…
Finds and genotypes non-allelic homologous recombination (NAHR) mediated…
De novo sequencing analysis
Predicts de novo profile generation based on sequence context. SPBuild…
Exploits matrix factorization for gene prioritization. This method leans on an…
Allows users to optimize a scoring function for pairwise-profile alignment…
Metagenomic sequencing analysis
Identifies structural variation across (1) a collection of assemblies and (2) a…
Allows researchers to directly retrieve the annotation of a hit from the…
Allows to rank, filter and explore cancer genomics data (genes, cell lines and…