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Ariane Bize - Microbial ecologist
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Ariane Bize

Microbial ecologist
National Research Institute of Science and Technology for Environment and Agriculture • Antony • France

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • Metagenomic sequencing analysis
  • MS-based untargeted metabolomics
  • English
  • French
Programming languages
  • Python
  • R

Fields of interest

De novo sequencing analysis
Provides a tool to select the band width according to the read’s error rates.…
Investigates biological patterns. PatScan is an application based on the use of…
Provides a method for inferring transmission events. BadTrIP models evolution…
Metagenomic sequencing analysis
Permits exome, whole-genome, and targeted sequencing analyses. Mosdepth is a…
Provides a read alignment software for whole genome sequencing (WGS). CS-BWAMEM…
Categorizes organisms of interest into species by exploiting genomic…
MS-based untargeted metabolomics
Permits intuitive quantitative analyses and comparative visualisation of…
Provides a package for metabolic modeling of microbial communities. Micom…
Allows to simulate the effects of reaction inhibition across different stages…