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Asifa Rafiq

University of Engineering and Technology Lahore • Lahore • Pakistan

Skills and expertise

Fields of interest
  • WGS analysis
  • BS-seq analysis
  • MS-based untargeted proteomics
  • English
Programming languages
  • C++

Fields of interest

WGS analysis
Performs somatic variant calling. DeepSomatic consists of a convolutional…
Serves as a dynamic alignment-free and reference-free read compression tool.…
Consists of a statistical mixture of different genotyping error profiles. Geck…
BS-seq analysis
Supplies a protein homology search method alternative to BLAST. TOPAZ is a…
Allows users to filter, convert and combine multiple data files produced by…
Supplies a set of features dedicated to quality check (QC) of next generation…
MS-based untargeted proteomics
Consists of a parsimonious charge deconvolution algorithm that produces fewer…
Allows validation of crosslinked peptides identified in crosslinking in…
Assists in the development of web-based tools and data visualizations. phpMs…